3 ms·
The error rate of recent nanopore data is much less than 30%. See here for a recent benchmark: https://github.com/rrwick/Basecalling-comparison https://github.c
by bsmrea 9y ago
The error rate of recent nanopore data is much less than 30%. See here for a recent benchmark: https://github.com/rrwick/Basecalling-comparison https://github.com/rrwick/Basecalling-comparison
- searine 9y agoInteresting, I haven't tried it on the newest chemistry but last time I did a flowcell (earlier this year) that was the INDEL error rate we achieve. Substitution error rate was very low, but you should evaluate INDELs specifically, rather than just identity like you did on your git, because it is the major drawback of this technology.
- bsmrea 9y agoJust to be clear this isn't my analysis - and yes most of the errors here are due to indels.