bpeng2000

3 ms·

1.
by bpeng2000 9y ago
Yes, multi-language notebooks solve the "multi-language" but not the "large-scale" problems with bioinformatics (or data science) data analysis. However powerful other notebook environments can be, they are rather limite
2.
by bpeng2000 9y ago
We are in the same boat, and that is why SoS Notebook allows you to execute parts of scripts in the side panel. Basically, you will need to select the graphic-generation part of the script and press Ctrl-Shift-Enter to see the output in the
3.
by bpeng2000 9y ago
Thank you for your comment on the usefulness of the multi-kernel setup of SoS Notebook. Please feel free to try SoS Notebook on our live SoS server (click the rocket button on the top right corner of the SoS homepage). The architecture of t
4.
by bpeng2000 9y ago
We are well aware of the Beaker Notebook and BeakerX and appreciate the great work they are doing. We however decided to develop our own tool because of a few specific reasons such as we needed support for MATLAB and SAS, we needed a more p
5.
by bpeng2000 9y ago
Just a bit more background. We are bioinformaticians who routinely analyze large datasets using tools and libraries in many different languages. Jupyter Notebook supports a large number of kernels but it does not allow us to use multiple ke
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by bpeng2000 9y ago
1). No. As explained in the post, the data "exchange" is accomplished by creating another variable of similar type in the destination kernel so the resulting variable is independent of the homonymous variable in the sending kernel
7.
Show HN: SoS Notebook – Using multiple kernels in one Jupyter notebook(vatlab.github.io)
41 points by bpeng2000 9y ago|11 comments