3 ms·
> Polygenic scores are touted as this magic bullet for understanding the contribution of genetics to a phenotype but are utterly imperfect models for what actua
by MontyCarloHall 4y ago
> Polygenic scores are touted as this magic bullet for understanding the contribution of genetics to a phenotype but are utterly imperfect models for what actually occurs due to pleiotropy and epigenetics
Agreed! To be a bit more charitable to polygenic scores, they can be mediocre descriptive models—given a real individual’s genotype, they can sometimes decently predict their phenotype (if you consider explaining ~10% of phenotypic variance “decent”).
They are unequivocally horrible generative models—you will not obtain a synthetic genotype that would result in a desired phenotype by sampling from a PGS model, i.e. by randomly maximizing the number of high-scoring PGS alleles in a synthetic genome, as proposed by the article.
- Fusionnex 4y agoI like the contrast between descriptive vs generative here. Really puts this into context. If you want to understand the contribution of any particular allele PGS is reasonable. But using PGS to generate a phenotype violates so many assumptions.