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That's an answer which hasn't had much thought applied to it. In the groups I've worked in, the problems with culture conditions were long appreciated. The fa
by rleigh 8y ago
That's an answer which hasn't had much thought applied to it. In the groups I've worked in, the problems with culture conditions were long appreciated. The factors entrenching the existing practices are largely down to: standardisation between laboratories, being able to publish (non-standard practices can be a large negative for reviewers), and cost (DMEM is cheap in liquid or powder form).
I've used specialist media for endothelial cells, and stem cells of various types (human and mouse, embryonic and mesenchymal). It could be up to £200 for 500ml of culture media, with a shelf life of just a week once you'd added all the frozen supplements. This makes things very costly once you scale things up.
But culture media are only the beginning of the problem. Another source of big problems are the culture conditions. Standard incubator conditions used everywhere are 37.5°C, 5% CO₂, 100% humidity. However, this is not remotely realistic, and is actively damaging to most cell types. The 5% CO₂ keeps the pH in balance (the media contains buffers). But the other 95% is regular atmosphere containing ~20.9% O₂, so the effective concentration is ~19.9% O₂. But the physiological oxygen concentration in the body's tissues is much less, a fraction of a percent.
One culture phenomenon is that "primary" cultures of isolated cells don't proliferate much, but after several "passages" they eventually become "established" and more proliferative (essentially, somewhat cancerous, and losing some of the characteristics of the original cell type). There is also a limit on the total number of passages the cells can withstand (all except the most aggressive cancer lines). This is largely down to cumulative DNA damage from oxygen. If you culture the same cells under low oxygen conditions, the cells don't become established, retain their characteristics, and can be cultured nearly indefinitely. Much more realistic. This can be done with an incubator with additional gas feeds and an oxygen sensor, which can purge the excess oxygen with N₂ then add CO₂ to 5%.
Another problem is that the culture medium is static. The cells use up its nutrients and then sit in their own waste. It needs regular replacement. But this cycle of nutrient excess and deficit and waste accumulation isn't realistic either, and may also have profound effects upon cellular physiology. Tissues in the body are continually perfused by blood plasma, maintaining nutrient levels and removing waste. This is something else which researchers should be developing; in fact, developing such systems was a part of my PhD (an unsuccessful part, I should add; it's actually quite technically difficult to perfuse patterned 3D scaffolds). But doing this for flasks and plates is a much simpler problem.
So these three major areas (media, conditions, perfusion) all contain major deviations from physiological conditions which all have the potential to grossly affect research outcomes. The fact that we have all collectively stuck with what worked for over 50 years is somewhat outrageous, particularly when for the first two there are commercial solutions which could be used today, but most people ignore. That's lazy. None of it is a "money-making scheme", though there would certainly be opportunities for media and equipment vendors.
- CamperBob2 8y agoSo -- ignorant question here -- why not just use human blood, instead of trying to emulate it? Obviously this has consistency and reproducibility problems of its own, but are they worse than the effects of using a completely alien medium?
- thoxahr 8y agoBlood contains immune system elements which would likely reject cancer samples from a different donor. Having to obtain blood and cancer sample from the same donor would complicate things quite a bit. In addition, it doesn't seem as though they are able to recycle the medium. Frequently draining and refilling with fresh blood seems rather wasteful.
- rleigh 8y agoThe immune cells are trivial to remove; a few minutes in a centrifuge is all that is required. Even antibodies can be separated out pretty easily (though I haven't done it myself). The problem is the quantity and quality of the product. And blood alone isn't sufficient; it doesn't contain enough glucose and other metabolites to sustain cells for long (since it's continuously circulating and levels are maintained by the body, which isn't true for a culture flask).
- rleigh 8y agoHuman blood is limited in availability, and would be phenomenally expensive as well as having the reproducibility problems you mentioned. We use FBS (fœtal bovine serum) as a substitute. It's routinely added to culture media such as MEM and DMEM; 10% v/v is typical. This is still pretty expensive though, as well as having ethical concerns (the extraction process is horrific). It's also still rather unrealistic. Most cells aren't directly exposed to blood plasma and all of its proteins. They are perfused by interstitial fluid which is blood plasma filtered through the capillaries. One of the goals of some of the more modern media (as in this article) is to supplement every known necessary component of blood plasma to avoid the need for any animal-derived sera, and to make the media completely defined and standardised. This isn't new; people were doing this over a decade back when I was working on my PhD. However, the number of components in blood plasma makes this difficult, if not intractable. Most of these new media had a small amount of FBS (≤1%) to make up for the unknown components. That notwithstanding, the efforts to better understand the exact requirements are laudable. However, proving that all the needed components are present and in the correct concentrations is difficult if not impossible, since it might appear to work while causing some subtle physiological change. We might have to settle for "appears to be good enough for all common cell types". But even that would be a huge improvement upon the status quo.