I'm still ramping up on git-annex, but basically (once set up): git annex add large_file git commit And with mixed (haven't experimented with that yet

I'm still ramping up on git-annex, but basically (once set up): git annex add large_file git commit And with mixed (haven't experimented with that yet), I'm pretty sure you could: git annex add large_file git add small_file git commit