It depends what you're using the feces to accomplish. Usually FMT is done for people suffering from CDiff infections. The healthy gut flora outcompete the CDiff

It depends what you're using the feces to accomplish. Usually FMT is done for people suffering from CDiff infections. The healthy gut flora outcompete the CDiff, causing the infection to go away. Mother's milk is mostly viruses, so it's unlikely this would work against CDiff. For other users is sounds interesting though!