I coded this library during my PhD, where I applied Markov Chains to the study of protein folding dynamics. I am quite confident with it, but as far as I know f

I coded this library during my PhD, where I applied Markov Chains to the study of protein folding dynamics. I am quite confident with it, but as far as I know few others used it. At that time, I used pykov with networks of around 100k nodes and 500k links. Only recently I replaced pysparse with scipy sparse solvers. Entire methods are comment out because they are heuristics that do not belong to the standard Markov Theory, and they can be removed.