I always got the feeling that installing Homebrew and running the associated apps that run under X but not natively under Quartz was a broken way to get apps on

I always got the feeling that installing Homebrew and running the associated apps that run under X but not natively under Quartz was a broken way to get apps on Mac OSX (unless it runs under Quartz now...?) It feels like the "dirtying" of the native system in the same way that installing cygwin and a mingw and GNUWin32 on Windows does, just in order to get it more like Windows. Rather, I'd use the native utilities on the system and native compilers. Is it just me who feels this way? Does any Linux user feel compelled to install Linux and then run software ONLY under Wine?