The key is neutralizing the triple-rocket launcher and optionally the ion weapon as fast as possible (i.e. by teleporting). With that taken care of and sufficie

The key is neutralizing the triple-rocket launcher and optionally the ion weapon as fast as possible (i.e. by teleporting). With that taken care of and sufficient damage output the boss is not much of a challenge. Actually, killing off all crew turns over the control over the ship to the AI which is capable of making repairs in any room which is undesirable.