We're getting around this by putting a paragraph at the end of the conclusion with a link that says something to the effect of "Click here for a live version of

We're getting around this by putting a paragraph at the end of the conclusion with a link that says something to the effect of "Click here for a live version of the paper with all the code and data used in this project." It's a little more cumbersome than having the paper actually be the notebook but it helps.