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bioinformaticians have been making these useless bioinformatic-toolkit-in-my-favorite-programming-language repos for years
by semiinfinitely 5mo ago
bioinformaticians have been making these useless bioinformatic-toolkit-in-my-favorite-programming-language repos for years
- gilleain 5mo agoHate to agree, but it is true. For a while, I think, the main sequencing framework was in perl (Bioperl). Not sure what was best for structures - possibly Biojava? It is very tempting, though - 'just' make a nice, clean API in your favourite language (eg Haskell, Ruby, ...) and everyone will flock to use it! Maybe.
- alice-fishr 5mo agoWhy don't you mention Biopython? Bioperl is already too old and not much up-to-date with newest data.
- flobosg 5mo agoHe’s talking about the past (“For a while, …”). Up to early 2010s, I would say.
- maxall4 5mo agoWell, what else are we going to do while waiting for the bench scientists to finish collecting data?
- asdff 5mo agoDissertationware is common in a lot of fields, honestly.