You can allow by prefix, and the permission dialog now explicitly offers that as an option when giving permission to run a command But that has its limits. It'

You can allow by prefix, and the permission dialog now explicitly offers that as an option when giving permission to run a command But that has its limits. It's very easy to accidentally give it permission to do global changes outside the work dir. A contained environment with --dangerously-skip-permissions is in many ways much safer