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spawning shell commands and the equivalent of piping is surprisingly hard in python. It's almost easier to do in C There are probably libraries that could help
by procaryote 1y ago
spawning shell commands and the equivalent of piping is surprisingly hard in python. It's almost easier to do in C
There are probably libraries that could help, but then you need to install dependencies which is sad in python for other reasons
- croemer 1y agoWe use snakemake a lot in bioinformatics to take advantage of parallelism in workflows while staying close to Python: https://github.com/snakemake/snakemake https://github.com/snakemake/snakemake Others use nextflow but that requires learning Groovy and it's less intuitive.