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The association between pathogens and cancer is under-appreciated, mostly due to limitations in detection methods. For instance, it is not uncommon for cancer
by panabee 1y ago
The association between pathogens and cancer is under-appreciated, mostly due to limitations in detection methods.
For instance, it is not uncommon for cancer studies to design assays around non-oncogenic strains, or for assays to use primer sequences with binding sites mismatched to a large number of NCBI GenBank genomes.
Another example: studies relying on The Cancer Genome Atlas (TCGA), which is a rich database for cancer investigations. However, the TCGA made a deliberate tradeoff to standardize quantification of eukaryotic coding transcripts but at the cost of excluding non-poly(A) transcripts like EBER1/2 and other viral non-coding RNAs -- thus potentially understating viral presence.
Enjoy the rabbit hole. :)
- edem 1y agocan you translate this to English?