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What's current way to accessibly process my 23andme raw data ? It's been synthesized decade ago and SNPedia and Promethease seems abandoned, so what's alternati
by diimdeep 1y ago
What's current way to accessibly process my 23andme raw data ? It's been synthesized decade ago and SNPedia and Promethease seems abandoned, so what's alternative if there is, and if there is none how we arrived to this?
- iijj 1y agoI was no longer on the scene when it happened, but I’ve been told it became very difficult to get ongoing funding from the National Science Foundation for bioinformatics software around 10 years ago. You could get an initial grant to develop something, but ongoing support was difficult. So websites and ‘databases’ (curated datasets) that made it easy to run the tools faded away.
- vintermann 1y agoWhat format is the 23andMe data in, by the way?
- diimdeep 1y agotab delimited file (usually compressed for distribution), containing the fields rsid, chromosome, position, genotype (e.g. rs3094315 1 742429 AG).