Was not familiar with the details of mass spectography. Found this[1] page which includes an explanation of how it works, and also shows some analysis using th

Was not familiar with the details of mass spectography. Found this[1] page which includes an explanation of how it works, and also shows some analysis using the Spectra R package. The SpectraQL[2] package adds MassQL support to Spectra, so one can compare a bit. [1]: https://uclouvain-cbio.github.io/WSBIM2122/sec-ms.html https://uclouvain-cbio.github.io/WSBIM2122/sec-ms.html [2]: https://doi.org/doi:10.18129/B9.bioc.SpectraQL https://doi.org/doi:10.18129/B9.bioc.SpectraQL