If your strand length is less than or equal to the read length of your sequencer, and you have the address blocks at the start of every sequence, you don't real

If your strand length is less than or equal to the read length of your sequencer, and you have the address blocks at the start of every sequence, you don't really need to worry about assembly. Read depth and/or a checksum of some kind will take care of errors in sequencing, and with short strands or compression of some kind, long repeats aren't much of a problem either.