Assuming you have a dimension-reduction or manifold learning tool of choice (UMAP,PacMAP,t-SNE,PyMDE,etc.) then DataMapPlot (https://datamapplot.readthedocs.io/

Assuming you have a dimension-reduction or manifold learning tool of choice (UMAP,PacMAP,t-SNE,PyMDE,etc.) then DataMapPlot (https://datamapplot.readthedocs.io/en/latest/ https://datamapplot.readthedocs.io/en/latest/) is a library specifically designed to make visualizations of the outputs of your dimension reduction.