Regarding versioning — it sounds like 80% of your issues exist because of the lack of a project environment. Have you ever checked out `renv`? It should work q

Regarding versioning — it sounds like 80% of your issues exist because of the lack of a project environment. Have you ever checked out `renv`? It should work quite well with Bioconductor. (Dumping data into binaries is… unfortunate, but this sounds more like a training issue than anything else.)