> I understand this is really the core of your complaint If you think that it is the core of my complaint, then you did not understood at all. This element is

> I understand this is really the core of your complaint If you think that it is the core of my complaint, then you did not understood at all. This element is just there to say that it's easy to not understand the situation of the scientists and to conclude that it's just because they are stupid or they are not doing the things right. You were the one talking about "poor practices induced by the corrupt incentives of academia", but this is just incompatible with the reality: in region where the "publish or perish" has no impact (and these regions exist, only people who know academia superficially don't realize that), we still see the same software development "mispractice". This is why I'm talking about ego: it is so easy for you to just rationalize different practice as "being somehow forced to do a bad job". > we agree that reproducibility is important I don't think you understand what I call "reproducibility". In science, reproducibility means FROM SCRATCH! You know the result, and you rebuild your own experiment. If you copy the experiment of the first author, you will copy the experimental error too. Reproducibility is one of the reason some of the thing you pretend is a good practice is in fact not ideal in the context of science (as I've said, I myself push for sharing a clean code, but it is just that some of the important goal for usual software development don't exist in the same way in the scientific development context). > but you don't understand software engineering as a practice I understand very well why the good practice are indeed very important in the context of the usual software development. Again, you are just rationalising: you see m not agreeing with you, so you invent that I don't understand why good practices are used. It's again an easy way to not challenge what you consider as obvious. > Good engineering is absolutely not about "blindly applying tradition". Exactly. People who are jumping on the conclusion "if the scientists are not using these practice, then they are doing a bad job" are bad engineers. You keep talking about good engineering practice as if these practices are always the correct way to go. Except it is not the case. As given in some example, wasting time on a "clean" architecture on something that the author is smart enough to know that it has a high probability to disappear in one week is not a "good practice". Yet, you are still talking to me as if this practice is "obviously good". It is very good for usual software development, when you have a large set of users and you want to maintain the software for years. But it makes no sense when the software is for the author of the software only and that everyone agrees it would be better to write a proper implementation of the final conclusion rather than to mix the goal and build a robust tool before exploring. So, yes, you are blindly following the tradition: you just refuse to even consider that maybe what you have adopted in your mind as "good" may not be the best in a different context.