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As someone who dips into nextflow from time to time, I'd strongly suggest by developing your pipeline based on an existing nf-core pipeline or the nf-core templ
by a_bonobo 3y ago
As someone who dips into nextflow from time to time, I'd strongly suggest by developing your pipeline based on an existing nf-core pipeline or the nf-core templates. nf-core comes with a bunch of nicer defaults like profiles for SLURM, Singularity, Docker that help you abstract some of the headaches away, plus you could get lucky and can just glue some of their modules together.
- geoffjentry 3y agoI don’t know. I started this route and then quickly switched to only dipping into nf-core when they had actual prior art. The interplay of nf and groovy (how I wish they hadn’t used groovy!) can be mind bending but if you’re writing your own thkng you have a different optimization model than nf-core that is trying to be one size fits all