3 ms·

Its fantastic but it doesn't scale laterelly particularly well, compared to just Make.

• ta988 3y ago
  What dimension are you referring to?
  • tetris11 3y ago
    Large scale reproducibility was a problem a few years back for one. Conda and containers were a constant problem for us back then, especially if you had multiple NGS tools running in different environments. This has probably been solved by now, but we went with another workflow system
    • bafe 3y ago
      Nextflow seems to scale very well
      • tetris11 3y ago
        We went with Nextflow and Galaxy
        • bafe 3y ago
          You can't go wrong with nextflow. I heard a lot of scientists complaining that it's too hard to understand, but honestly the DSL and the scheduling model (flow based) is just great
    • ta988 3y ago
      Agreed, Conda has always been a nightmare to maintain and redeploy, whatever you put it in.