4 ms·
This looks excellent for my use case, which is visualizing viroid and viroid-like circular genomes. Right now, I reluctantly use the R version but am eager to t
by benjamin-lee 4y ago
This looks excellent for my use case, which is visualizing viroid and viroid-like circular genomes. Right now, I reluctantly use the R version but am eager to try this out. I spent countless hours making this figure [1] for my last paper and am quite confident that would have saved me a ton of time.
If you get a chance, please do publish this package in something like the Journal of Open Source Software so that I can cite it. Thanks for sharing this tool!
[1] https://www.cell.com/cell/fulltext/S0092-8674(22)01582-3#gr4 https://www.cell.com/cell/fulltext/S0092-8674(22)01582-3#gr4
- kkoncevicius 4y agoWhich R equivalent for circular plots did you use?
- moshi4 4y agoFrom the citation, it looks like circlize was used. https://github.com/jokergoo/circlize https://github.com/jokergoo/circlize
- moshi4 4y agoAs you mentioned, pyCirclize can easily plot a circular genome map like the one in that paper. > If you get a chance, please do publish this package in something like the Journal of Open Source Software so that I can cite it. I will consider it.