You made a great point! I will think about implementing ezy flow) But right now I will try to explain and help: Let's say you have src of protos with subfolde

You made a great point! I will think about implementing ezy flow) But right now I will try to explain and help: Let's say you have src of protos with subfolders which you call subsystem If I understand correctly, subsystem - isolated system (like a service) with own API. If so, then in ezy you should create collection for every subsystem module where you may have root proto file. The second step is include directories - this directories are paths to your directories where gogos's proto files lives. I hope this helps! If you have any troubles and instered in setup you can open an issue in project repository. I love critic because without talks we can't understand what the community wants. Thank you for this it really helps!