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In this snippet from the abstract, S stands for spike protein: > "We generated chimeric recombinant SARS-CoV-2 encoding the S gene of Omicron in the backbone o
by photochemsyn 4y ago
In this snippet from the abstract, S stands for spike protein:
> "We generated chimeric recombinant SARS-CoV-2 encoding the S gene of Omicron in the backbone of an ancestral SARS-CoV-2 isolate and compared this virus with the naturally circulating Omicron variant. The Omicron S-bearing virus robustly escapes vaccine-induced humoral immunity, mainly due to mutations in the receptor-binding motif (RBM), yet unlike naturally occurring Omicron, efficiently replicates in cell lines and primary-like distal lung cells. In K18-hACE2 mice, while Omicron causes mild, non-fatal infection, the Omicron S-carrying virus inflicts severe disease with a mortality rate of 80%. This indicates that while the vaccine escape of Omicron is defined by mutations in S, major determinants of viral pathogenicity reside outside of S."
https://www.biorxiv.org/content/10.1101/2022.10.13.512134v1.full.pdf https://www.biorxiv.org/content/10.1101/2022.10.13.512134v1....
See russfink comment above for the relative mortality compared to the original Wuhan strain (100% for Wuhan compared to 80% for this hybrid). So this researcher-generated strain appears to be intermediate in mortality between the original Wuhan strain and Omicron, BUT it escapes vaccination relative to the Wuhan strain, making it more dangerous in that regard and more likely to spread through a vaccinated population causing significant mortality. I'd classify this as reckless and irresponsible research.
As far as the original Wuhan strain, we have about four theories of origin. (1) natural wild type with no lab research involvement, (2) natural wild type collected by a lab and accidentally released from that lab, (3) wild type 'heated up' by serial passage through mice and cloned human-type cells without explicit genetic engineering, and (4) deliberate engineering using a CRISPR system to insert a furan cleavage site in a collected wild-type virus, which allowed a bat virus to leap to a human host.
Really (4) has the most evidence at this point, and note that this is not entirely the fault of the Chinese Wuhan Institute of Virology as the research concept was partially developed in the USA and continued (despite an Obama-era ban on gain-of-function research) in China with Ecohealth Alliance funding.
As far as why doing gain-of-function research to predict 'emerging disease outbreaks' is a godawfully stupid idea, it's that it appears that almost any infectious animal virus can be converted to a human pathogen by selective transfer of human-receptor-binding motifs, even though such transfer would never take place under natural conditions. An immediate global ban on this kind of research (under the Biological Warfare Convention) is needed.
- shadowgovt 4y ago> such transfer would never take place under natural conditions How confident are we that is the case? HIV resulted from the fusion of, IIRC, three virii in a host animal. The odds of any single such event are vanishingly small, but that stacks against how many cells per second a virus can infect, worldwide. Life is a frightening goodness-of-fit optimizer at the scale of microorganization.
- mgamache 4y agoIt would never take place between animals that don't naturally cohabitate.
- photochemsyn 4y agoStudying rare historical accidents of evolution that resulted in pandemics to see how they took place is one thing, but creating hundreds of such accidents of evolution deliberately to see how many novel deadly pathogens one can create is quite another. In the case of HIV: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3234451/ https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3234451/ Now, should we start taking all the viruses known to infect every species of squirrel, rat, monkey, gorilla and chimpanzee and start splicing in motifs that bind, say, the top 100 most common human cell-surface receptors in order to see what's the most dangerous virus - with the optimal mix of mortality and transmissibility (R factor) - we can create, the one best able to cause a global human pandemic? That's insane, and there's no justification for it.
- shadowgovt 4y agoIs that research done? I don't think that's an accurate description of gain-of-function research; I thought it was more focused than "just throw everything in a beaker and see what happens." I agree that's a bad idea.
- tsimionescu 4y agoIt's more focused exactly in the sense that it is specifically targeting known-dangerous characteristics - hence gain of function: they're aiming to increase the virus' ability to do something.