I've been using a library to knit Rmarkdown files to OneNote API compatible HTML (https://github.com/CopenhagenCenterForGlycomics/knoter https://github.com/Cope

I've been using a library to knit Rmarkdown files to OneNote API compatible HTML (https://github.com/CopenhagenCenterForGlycomics/knoter https://github.com/CopenhagenCenterForGlycomics/knoter), which lets me output PDF figures (that I can download to go into Illustrator for the publication process), Excel files (which are great for validation and supplemental tables especially with wet lab scientists), and ad-hoc annotation on the document in one package (highlight text, scribble notes etc). It would be awesome if there was a little bit more support for adding collapsible sections, and code blocks into OneNote pages so that I can look at everything in one spot.