I did something similar but for the AI Foundations of Computational Science (http://artint.info/html/ArtInt.html http://artint.info/html/ArtInt.html) by scrappi

I did something similar but for the AI Foundations of Computational Science (http://artint.info/html/ArtInt.html http://artint.info/html/ArtInt.html) by scrapping the HTML, stripping the heading/footer sections and creating an epub book. Unfortunately my ebook Reader (PRS 950) does not seem to like it as it resets while loading the ebook. I wish I could share the results but the book is under CC "no derivatives" license.