3 ms·
The current version of the python lib seems to be extremely badly written code. Or is the algo so bad ? Takes something like 21s to compute the correlation for
by zmachinaz 5y ago
The current version of the python lib seems to be extremely badly written code. Or is the algo so bad ? Takes something like 21s to compute the correlation for just 10k samples.
- flyingmutant 5y agoThis issue contains simple code that is claimed to be >300x faster: https://github.com/czbiohub/xicor/issues/17 https://github.com/czbiohub/xicor/issues/17
- malshe 5y agoThanks for locating the solution. I didn’t check the Python code myself so I wasn’t sure what was going on with the slow processing