This is a big part of the answer. Usually when you're adding power, its because you want to go up so the last thing you want to happen is for the nose to go do

This is a big part of the answer. Usually when you're adding power, its because you want to go up so the last thing you want to happen is for the nose to go down. The higher up the engines are relative to the center of mass the more of a downward pitching moment you'll get. Also, I believe (and I'm very much not sure about this) but the above wing mounts like the Honda Jet can have nasty implications for flutter or some other structural issues if you aren't really careful. Its like the dynamic instability of trying to hold a stick at the bottom vs the top.