Maybe not agencies as you mean, but it does have: * Marine Corps Counterintelligence: https://en.wikipedia.org/wiki/Marine_Corps_Intelligence#Marine_Corps_Coun

Maybe not agencies as you mean, but it does have: * Marine Corps Counterintelligence: https://en.wikipedia.org/wiki/Marine_Corps_Intelligence#Marine_Corps_Counterintelligence https://en.wikipedia.org/wiki/Marine_Corps_Intelligence#Mari... * United States Army Counterintelligence: https://en.wikipedia.org/wiki/United_States_Army_Counterintelligence https://en.wikipedia.org/wiki/United_States_Army_Counterinte... * Defense Counterintelligence and Security Agency: https://en.wikipedia.org/wiki/Defense_Counterintelligence_and_Security_Agency https://en.wikipedia.org/wiki/Defense_Counterintelligence_an... * National Counterintelligence and Security Center: https://en.wikipedia.org/wiki/National_Counterintelligence_and_Security_Center https://en.wikipedia.org/wiki/National_Counterintelligence_a... Found via https://en.wikipedia.org/wiki/List_of_counterintelligence_organizations https://en.wikipedia.org/wiki/List_of_counterintelligence_or... AFAICT the NCSC is independent from the CIA, though both do fall under the DNI. And the DCSA does have "agency" in its name. ;) The hierarchy became more complex and confusing after the 9/11 reorganization, and apparently has continued to do so.