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- R package "matrixTests": https://github.com/karoliskoncevicius/matrixTests https://github.com/karoliskoncevicius/matrixTests I often have to perform statisti
by kkoncevicius 5y ago
- R package "matrixTests": https://github.com/karoliskoncevicius/matrixTests https://github.com/karoliskoncevicius/matrixTests
I often have to perform statistical tests on genomic data. Which in practice means running the same test on every gene (row of a matrix). Running it separately on each row is slow, specially in R. Hence to speed it up I started an R package which is a lot faster and deals nicely with edge case scenarios (missing values, infinities, empty matrices, etc).
- R package "annmatrix":
https://github.com/karoliskoncevicius/annmatrix https://github.com/karoliskoncevicius/annmatrix
An S3 object for matrices with persistent metadata. This again is mostly relevant in genomic contexts where a matrix of, say, gene expression has to also keep information about rows (gene names, positions, chromosomes), as well as samples (disease status, age, sex).
- R package "basetheme":
https://github.com/karoliskoncevicius/basetheme https://github.com/karoliskoncevicius/basetheme
On of the advantages of ggplot2 in R is the ability to specify themes. I prefer working in base plotting system and ended up creating a package that allows setting themes for base graphics.
- Vim plugin "sendtowindow" https://github.com/karoliskoncevicius/vim-sendtowindow https://github.com/karoliskoncevicius/vim-sendtowindow
A minimal plugin which implements an operator for sending text to another window. Handy for sending code from the buffer to a REPL running within another ":terminal" buffer.