The AutoHotkey Script I use on Windows works very well in almost all applications. But in IntelliJ on Windows (not in Linux) it happens multiple times per hour

The AutoHotkey Script I use on Windows works very well in almost all applications. But in IntelliJ on Windows (not in Linux) it happens multiple times per hour that Shift, Ctrl or Alt locks get engaged (which I didn't know even existed) or that the Script reverts to Qwerty without warning. Restarting the script helps, but it's so annoying that I consider running IntelliJ with an external JRE.