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The colored variant of a De Bruijin graph is used extensive for high throughput sequencing alignment, assembly or quantification. For example, Pufferfish [1] ha
by gww 6y ago
The colored variant of a De Bruijin graph is used extensive for high throughput sequencing alignment, assembly or quantification. For example, Pufferfish [1] has worked towards an efficient and compact index of these graphs.
[1] https://github.com/COMBINE-lab/pufferfish https://github.com/COMBINE-lab/pufferfish