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Generally, yes absolutely. I’ve been doing a project called “NanoSavSeq” (Nanopore Saliva Sequencing) in my free time. It’s published on dat right now since the
by koeng 6y ago
Generally, yes absolutely. I’ve been doing a project called “NanoSavSeq” (Nanopore Saliva Sequencing) in my free time. It’s published on dat right now since the raw files for Nanopore are really big (got too big for hashbase). There is one company doing it as well, but my version is completely open source and I’ve optimized it for affordable automation.
To give you a sense, you can buy one for 1k and do as much detection as a 64k device, and it’s small enough to fit in a backpack. One device should be able to do 500-1000 tests per 24hrs at a cost of about $10 per test, not including labor.
- iameoghan 6y agoWould love to know more. This is fascinating.
- koeng 6y agoThe dat website is at dat://aaca379867bff648f454337f36a65c8239f2437538f2a4e0b4b5eb389ea0caff You can visit with the beaker browser, or share it through dat so it won't ever go down. You can also visit it at http://www.nanosavseq.com/ http://www.nanosavseq.com/ (DNS is not up yet, http://167.172.195.83/book/index.html http://167.172.195.83/book/index.html is direct) It's embarrassingly barren right now, mainly since I've encountered some big problems with getting my DNA quantifier out of storage to start doing a lot more experiments. I'm getting that on Tuesday, so will be updating site then.
- unixhero 6y agoThe book / documentation is very clean and presented in a fantastic way. May I ask what engine you are using for presenting this book?
- koeng 6y agomdbook! By the folks making the Rust docs. I love their formatting.
- azureus 6y agoWould you like to work together on this? This is very interesting stuff.
- koeng 6y agoWould love to. Feel free to email me at koeng101<at>gmail.
- Gatsky 6y agoIs this with multiplexing? Or are you extending the flowcell life?
- koeng 6y agoMultiplexing. I use barcoded primers to amplify the sample, then pool and sequence