3 ms·
Severe acute respiratory syndrome coronavirus 2 Wuhan-Hu-1, complete genome
- rudolph9 7y agoCould someone post some helpful references on how the data is structured?
- zimpenfish 7y agoGoing off the links at the top, it's Genbank[1] or FASTA[2] (although the stuff on the FASTA version doesn't really match the example on the FASTA explanation.) [1] http://scikit-bio.org/docs/0.5.2/generated/skbio.io.format.genbank.html http://scikit-bio.org/docs/0.5.2/generated/skbio.io.format.g... [2] https://zhanglab.ccmb.med.umich.edu/FASTA/ https://zhanglab.ccmb.med.umich.edu/FASTA/
- acqq 7y agoOnce one is there, it's easy to see that there are also many other sequencings in the database, isolated on different locations. E.g. https://www.ncbi.nlm.nih.gov/nuccore/MT370930 https://www.ncbi.nlm.nih.gov/nuccore/MT370930 "collection_date="2020-03-22"" "Submitted (22-APR-2020) Center for Research on Influenza Pathogenesis (CRIP), New York, NY 10029-6574, USA"
- th3h4mm3r 7y agoOne question (If someone please can explain me) : if coronavirus is an RNA virus, why in the genome at end we can see "t" (timina, I don't know the name in english sorry!) and not "u" (uracile)?
- acqq 7y agohttps://bioinformatics.stackexchange.com/questions/11353/why-does-the-fasta-sequence-for-coronavirus-look-like-dna-not-rna https://bioinformatics.stackexchange.com/questions/11353/why... "Virtually all sequencing of RNA viruses is done through cDNA"