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I generally get annoyed at most analogies that compare DNA to code because they oversimplify a lot, but I really do like this particular DNA-code analogy. My u
by kibibyte 7y ago
I generally get annoyed at most analogies that compare DNA to code because they oversimplify a lot, but I really do like this particular DNA-code analogy.
My university molecular genetics course taught me that DNA is very complicated. Many of us know of the simplified model where an RNA polymerase, encouraged by some transcription factors, locates and binds to a promoter sequence, unwinds the strands, and constructs an RNA strand. However, DNA has a 3D structure. Histones can wind up DNA tightly enough to hide genes from transcription proteins, or they can unwind and expose DNA to encourage expression. Some transcription factors can bind to sequences several kilobases away from the target gene, cause that part of the DNA to fold onto itself, and ultimately bind to transcription proteins to encourage expression of the target gene.[0]
Extending your comment, it is entirely possible that bits and pieces of old viral code have accidentally led to weird things like this, and that many organisms now depend on this behavior.
[0]: https://en.wikipedia.org/wiki/Transcription_factor#/media/File:Transcription_Factors.svg https://en.wikipedia.org/wiki/Transcription_factor#/media/Fi...
(In the course of reading about transcription factors, I came across something pretty neat that's related to all this about 3D structures: https://en.wikipedia.org/wiki/Transcription_factories https://en.wikipedia.org/wiki/Transcription_factories)
Edit: I should also mention that, if it wasn't obvious, that viral DNA getting inserted into certain places can disrupt these complex interactions by increasing or decreasing the expression of a gene. For the cell/organism, this can be detrimental, benign, or perhaps beneficial.
- sudoaza 7y agoI was worrying about this, specially your latest edit, when i mentioned cleaning up. We could limit to very new additions though just in case. I know that there's maybe no reason to think that this random additions are any worse than the random+selected pieces that were coding before, but just seems ugly somehow.