I recommend nbstripout https://github.com/kynan/nbstripout https://github.com/kynan/nbstripout It eases most of the pain regarding version control. You can use

I recommend nbstripout https://github.com/kynan/nbstripout https://github.com/kynan/nbstripout It eases most of the pain regarding version control. You can use it as a 'git filter', so only inputs would be shown in diffs and committed (and also works with interactive adding!), while keeping outputs in your working tree.