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>>> Am I the only one to lament these black-box approaches? Far from it. Prediction looks like a tool in the arsenal for better understanding. One still has to
by ArtWomb 7y ago
>>> Am I the only one to lament these black-box approaches?
Far from it. Prediction looks like a tool in the arsenal for better understanding. One still has to correlate the structure with the complex interactions in vivo. Even using AI in classification mode, where we can segment a large atlas of tumor cells and identify a dozen or so classes of cell anomalies may lead to faster breakthroughs in immunotherapy.
What I am trying to wrap my head around is the synthesis problem. Say AlphaFold generates a promising candidate. One that does not exist naturally. You still need the DNA or mRNA transcription sequence to synthesize the protein, right? Won't some candidates simply be too complex and unstable to reliably produce using existing mammalian or baculovirus platforms?
- RocketSyntax 7y agoYou can use permuted feature importance to tell you what inputs are most correlated with the condition. WAYYYY better than the binary correlation methods most statistics use for each feature.
- ovi256 7y ago>Won't some candidates simply be too complex and unstable to reliably produce using existing mammalian or baculovirus platforms? You can add that to the objecting function that your model training function is optimizing, ensuring model output is not "too complex or unstable to reliably produce".