Pipeline mgmt tool with a GUI, or tool for cli tools with a GUI? ;) One very widely used option is Galaxy https://galaxyproject.org https://galaxyproject.org

Pipeline mgmt tool with a GUI, or tool for cli tools with a GUI? ;) One very widely used option is Galaxy https://galaxyproject.org https://galaxyproject.org You might also want to check out: - Arvados https://arvados.org https://arvados.org - Chipster https://chipster.csc.fi https://chipster.csc.fi - Knime https://www.knime.com https://www.knime.com They each have their strenghts and weaknesses. I'd probably be going with Galaxy as the default option, unless you find specific reasons to go with some of the others.