I've implemented graphs and trees in a relational DB quite a few times. For graphs you can just store an adjacency list. I think most of the large DB's now have

I've implemented graphs and trees in a relational DB quite a few times. For graphs you can just store an adjacency list. I think most of the large DB's now have tree traversal extensions to SQL (I know Oracle does). If you need to manipulate on the server then PL/Sql (or equivalent) can do the job. The only time I could imagine that you'd need a specialist graph database would be if you had a very large number of nodes and some time / space intensive algorithm to run over them. Even in this case you could just store the data in a relational DB and use a low level interface (e.g. C) to write the specialist algorithm.