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Largely unrelated but MPEG of mp3 fame has just released MPEG-G, a compressed file format for genomic data. Predictably, it's on track to be saddled with patent
by tgb 8y ago
Largely unrelated but MPEG of mp3 fame has just released MPEG-G, a compressed file format for genomic data. Predictably, it's on track to be saddled with patents. Imagine needing proprietary software to view your own genomic data - or for your new doctor to not have the software to read it! Here's one take worth reading on it: http://datageekdom.blogspot.com/2018/09/mpeg-g-ugly.html?m=1 http://datageekdom.blogspot.com/2018/09/mpeg-g-ugly.html?m=1
Also there's already a compressed data format called CRAM for this that has some traction and for which MPEG conveniently failed to compare itself to in their paper.
- jkbonfield 8y agoTo be "fair", their latest revision of the paper includes some figures from a 4 year out of date version of CRAM, which is an improvement on the 10 year old outdated format they used initially. ;-) Disclaimer, that's my blog and I'm the primary author of the newer version of CRAM.