I wrote my master thesis in markdown - tracked in git - and generated documents in PDF, HTML and docx with pandoc. Didn't try epub, though that's also possible.

I wrote my master thesis in markdown - tracked in git - and generated documents in PDF, HTML and docx with pandoc. Didn't try epub, though that's also possible. There were some issues, but overall it was an awesome experience. Unlike my friends, I actually enjoyed writing my thesis.