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> I find it fascinating how difficult it is to find geological data. Discoverability for openly released scientific datasets is a huge problem in general. Whi
by neuromantik8086 8y ago
> I find it fascinating how difficult it is to find geological data.
Discoverability for openly released scientific datasets is a huge problem in general. While some enterprising folks have worked on adding parsers for scientific data formats such NetCDF and HDF5 to Apache Tika (which can then be indexed by Solr/Elasticsearch/whatever) [0], the vast majority of scientific file formats don't have parsers available. Even worse, in the climate of publish-or-perish, most scientists are unaware of or less likely to prioritize the incorporation of metadata extraction / indexing tools, even though these would make their data more readily searchable based on relevant metadata (such as equipment settings, etc).
I have some personal experience in this area- when I was working as a research assistant, I basically did helpdesk support for an open access dataset, answering questions from researchers at other institutions. I'd estimate that of the questions I received in my inbox, close to 70% could have been resolved with a good implementation of faceted search. A related issue I encountered is that rather than relevant metadata existing alongside a dataset, sometimes I'd have to dive into an article's methods section to find it, often in a weird place that wasn't obvious at first glance due to the obtuse writing style that is encouraged for scientific publications.
The bigger problem, however, is that the culture of science in academia right now puts way too much emphasis on flashiness over sustainability and admittedly non-sexy tasks like properly versioning and packaging scientific software, documenting analyses, and producing well-characterized datasets.
[0] https://www.slideshare.net/chrismattmann/scientific-data-curation-and-processing-with-apache-tika https://www.slideshare.net/chrismattmann/scientific-data-cur...