The typical approach is to plot log(x+1) instead, which deals with the zeros as long as you know what you’re looking at. It’s nice to add some jitter too, e.g.

The typical approach is to plot log(x+1) instead, which deals with the zeros as long as you know what you’re looking at. It’s nice to add some jitter too, e.g. a uniform random float number in the -0.25 to 0.25 range.