Jupyter doesn’t track the execution history of your cells like this. However, you can run the shell commands straight from a notebook cell (use the %%bash cell

Jupyter doesn’t track the execution history of your cells like this. However, you can run the shell commands straight from a notebook cell (use the %%bash cell magic or prepend the line with !). Not sure what to do about editing data files. If you can do this with something like awk, just use a shell magic cell, but if it needs to be done manually I guess you’re stuck manually documenting this in markdown?