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You can very much disable FB and keep Messenger. Your account will get reactivated if you click through one of their emails or use FB login though.

• kvgr 9y ago
  I tried to do that, but it seems the option is not available when I was trying to deactivate facebook.
  • krrishd 9y ago
    It happens by default when you deactivate. Try deactivating and then logging into messenger.com or the Messenger app.