3 ms·
Interesting approach to getting at some dark spaces in our current understanding. What kind of computation time does it take to run against a single amnio acid
by jfarlow 9y ago
Interesting approach to getting at some dark spaces in our current understanding. What kind of computation time does it take to run against a single amnio acid chain? Can you get much (nice disorder predictions?) out of an amino acid sequence alone?
Our protein design work has its origins coming from a different angle. But there are some interesting thoughts we've had about utilizing (well, dreamed up) technologies like yours to quickly make up a lot of ground between structural prediction, and empirical functional design.
Starting to see such 21st century data standards for bio data! Yay for everyone!
- ktamiola 9y agoThank you for very kind comment. We are now finishing a predictor, which utilizes protein propensity data for mass-scale disorder and order predictions. The training times obviously vary on the network architecture, software and hardware. I can safely say you can process 7200+ protein sequence with average sequence length of 120 amino acids in 2h on 2 x NVIDIA Titan XP