Cool! I built something similar to the find tool for a friend. However, it's for RNA and specifically for looking for a region that could base pair as part of a

Cool! I built something similar to the find tool for a friend. However, it's for RNA and specifically for looking for a region that could base pair as part of an RNA secondary structure interaction. It allows you to search for all possible locations that could pair given a certain number of mismatches. It can also correlate against MFOLD predicted RNA secondary structures to eliminate possibilities that are not in single stranded regions. Tool: http://everttimberg.io/app/rna/ http://everttimberg.io/app/rna/