For most of the really time consuming steps the speedup isn't spectacular, 1.6x is not worth the effort http://ce-publications.et.tudelft.nl/publications/1520_

For most of the really time consuming steps the speedup isn't spectacular, 1.6x is not worth the effort http://ce-publications.et.tudelft.nl/publications/1520_gpuaccelerated_bwamem_genomic_mapping_algorithm_using_ada.pdf http://ce-publications.et.tudelft.nl/publications/1520_gpuac...