You can have all these in emacs and (probably) vim, as long as you configure them properly for the specific language bindings (for jump to definition). For book

You can have all these in emacs and (probably) vim, as long as you configure them properly for the specific language bindings (for jump to definition). For bookmarks, there's functionality in both, same for annotations (IIRC you can use org-mode to create annotations, for vim not sure what but definitely there is something)